Preprints
![](https://macleanlab.usc.edu/wp-content/uploads/2024/03/sthumbnail_38.jpg)
J Kreger, JA Mooney, D Shibata, AL MacLean
bioRxiv; 10.1101/2024.03.02.583106 bioRxiv
![](https://macleanlab.usc.edu/wp-content/uploads/2024/03/sthumbnail_37.jpg)
AG Baugh, E Gonzalez, VH Narumi, J Kreger, Y Liu, C Rafie, S Castanon, J Jang, LT Kagohara, DP Anastasiadou, J Leatherman, TD Armstrong, I Chan, GS Karagiannis, EM Jaffee, AL MacLean, ET Roussos Torres
bioRxiv; 10.1101/2024.01.25.577282 bioRxiv
![](https://macleanlab.usc.edu/wp-content/uploads/2023/04/sthumbnail_33.jpg)
MK Rommelfanger, M Behrends, Y Chen, J Martinez, M Bens, L Xiong, KL Rudolph, AL MacLean
bioRxiv; 10.1101/2023.04.18.537360 bioRxiv
Publications
![](https://macleanlab.usc.edu/wp-content/uploads/2024/03/sthumbnail_36.jpg)
S Chea, J Kreger, ME Lopez-Burks, AL MacLean, AD Lander, AL Calof
Science Advances (2024); 10.1126/sciadv.add9984 PubMed Science Advances
![](https://macleanlab.usc.edu/wp-content/uploads/2023/10/sthumbnail_35.jpg)
G Coulis et al.
Science Advances (2023); 10.1126/sciadv.add9984 PubMed Science Advances
![](https://macleanlab.usc.edu/wp-content/uploads/2023/05/sthumbnail_34.jpg)
L Xiong, J Liu, SY Han, K Koppitch, JJ Guo, MK Rommelfanger, F Gao, IB Hallgrimsdottir, L Pachter, J Kim, AL MacLean, AP McMahon
Dev Cell (2023); 10.1016/j.devcel.2023.08.010 PubMed Dev Cell
![](https://macleanlab.usc.edu/wp-content/uploads/2022/07/sthumbnail_30.jpg)
X Wu, R Wollman, AL MacLean
J R Soc Interface (2023); 10.1098/rsif.2023.0172 PubMed J R Soc Interface
![](https://macleanlab.usc.edu/wp-content/uploads/2022/07/sthumbnail_31.jpg)
J Kreger, ET Roussos Torres, AL MacLean
Can Immunol Res (2023); 10.1158/2326-6066.CIR-22-0617 PubMed Can Immunol Res
![](https://macleanlab.usc.edu/wp-content/uploads/2021/12/sthumbnail_27.jpg)
E Roesch, JG Greener, AL MacLean, H Nassar, C Rackauckas, TE Holy, MPH Stumpf
Nat Meth (2023); 10.1038/s41592-023-01832-z PubMed Nat Meth
![](https://macleanlab.usc.edu/wp-content/uploads/2023/04/sthumbnail_29.jpg)
AL MacLean
Nat Chem Biol (2023); 10.1038/s41589-022-01238-6 Nat Chem Biol
![](https://macleanlab.usc.edu/wp-content/uploads/2022/05/sthumbnail_28a.jpg)
AL MacLean
Cell Rep Meth (2022); 10.1016/j.crmeth.2022.100204 PubMed Cell Rep Meth
![](https://macleanlab.usc.edu/wp-content/uploads/2022/03/sthumbnail_27a.jpg)
M Suo, MK Rommelfanger, Y Chen, EM Amro, B Han, Z Chen, K Szafranski, SR Chakkarappan, BO Boehm, AL MacLean, KL Rudolph
Blood (2022); doi.org/10.1182/blood.2021012197 PubMed Blood
![](https://macleanlab.usc.edu/wp-content/uploads/2021/12/sthumbnail_26.jpg)
D Tatarakis, Z Cang, X Wu, P Sharma, MK Karikomi, AL MacLean, Q Nie, TF Schilling
Cell Reports (2021); 37(12), 110140 PubMed Cell Rep
![](https://macleanlab.usc.edu/wp-content/uploads/2021/04/sthumbnail_24.jpg)
MK Rommelfanger, AL MacLean
Development (2021); 148(24), dev199779 PubMed Development
![](https://macleanlab.usc.edu/wp-content/uploads/2021/02/sthumbnail_23.jpg)
HM Rando et al.
mSystems (2021); 6(5) PubMed mSystems
![](https://macleanlab.usc.edu/wp-content/uploads/2021/08/sthumbnail_x23.jpg)
AL MacLean, Q Nie
Phys Biol, (2021); 18:050201 PubMed Phys Biol
![](https://macleanlab.usc.edu/wp-content/uploads/2020/11/sthumbnail_22.jpg)
R Mitra, AL MacLean
Bioinformatics, (2021); btab260 PubMed Bioinformatics
![](https://macleanlab.usc.edu/wp-content/uploads/2019/04/sthumbnail_20.jpg)
DR Bergman, MK Karikomi, Q Nie, AL MacLean
Communications Biol, (2021); 4:983 PubMed Communications Biol
![](https://macleanlab.usc.edu/wp-content/uploads/2019/10/sthumbnail_20b.jpg)
S Wang, ML Drummond, CF Guerrero-Juarez, E Tarapore, AL MacLean, AR Stabell, SC Wu, G Gutierrez, BT That, CA Benavente, Q Nie, SX Atwood
S Wang et al.
Nat Commun, 2020; 11:4239 PubMed Nat Commun
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_1.jpg)
S Wang, MK Karikomi, AL MacLean, Q Nie
S Wang et al.
Nucleic Acids Res, 2019. gkz204 Pubmed Nucleic Acids Res
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_2.jpg)
AL MacLean*, T Hong*, Q Nie
Curr Opin Sys Biol, 2018. 9:32-41 Curr Opin Sys Biol
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_4.jpg)
S Jin, AL MacLean, T Peng, Q Nie
Bioinformatics, 2018. 34(12):2077-2086 Pubmed Bioinformatics
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_5.jpg)
Ben Lambert*, AL MacLean*, AG Fletcher, AN Coombes, MH Little, HM Byrne
Ben Lambert*, AL MacLean*, AG Fletcher, et al.
J Math Biol, 2018. 76(7):1673-1697 Pubmed J Math Biol
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_8.jpg)
Y Guo, Q Nie, AL MacLean, Y Li, J Lei, and S Li
Cancer Research, 2017. 77(22):6429–41 Pubmed Cancer Res
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_6.jpg)
AL MacLean*, MA Smith*, J Liepe, A Sim, R Khorshed, NM Rashidi, N Scherf, A Krinner, I Roeder, C Lo Celso, MPH Stumpf
AL MacLean*, MA Smith*, J Liepe, et al.
Stem Cells, 2017. 35(11):2292-2304 Pubmed Stem Cells
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_7.jpg)
T Peng*, L Liu*, AL MacLean, CW Wong, W Zhao, Q Nie
T Peng*, L Liu*, AL MacLean, et al.
BMC Sys Bio, 2017. 11(1):55 Pubmed BMC Syst Biol
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_9.jpg)
AL MacLean, C Lo Celso, MPH Stumpf
Stem Cells, 2017. 35(1):80-88 Pubmed Stem Cells
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_10-copy.jpg)
HL Crowell*, AL MacLean*, MPH Stumpf
J Theor Biol, 2016. 401:43-53 Pubmed J Theor Biol
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_12-copy.jpg)
AL MacLean*, P Kirk*, MPH Stumpf
Biol Open, 2015. 4:1420-1426 Pubmed Biol Open
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_13-copy.jpg)
P Kirk*, DMY Rolando*, AL MacLean, MPH Stumpf
New J Phys, 2015, 17(8) New J Phys
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_16-copy.jpg)
AL MacLean, HA Harrington, MPH Stumpf, MDH Hansen
Biomedicines, 2014. 2(4):384-402 Pubmed Biomedicines
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_14-copy.jpg)
AL MacLean*, S Filippi*, MPH Stumpf
Proc Natl Acad Sci USA, 2014. 111(10):3882-88 Pubmed PNAS
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_17-copy.png)
AL MacLean, C Lo Celso, MPH Stumpf
J R Soc Interface, 2013. 10(81):20120968 Pubmed J R Soc Interface
Peer-reviewed Book Chapters
![](https://macleanlab.usc.edu/wp-content/uploads/2018/11/sthumbnail_18.jpg)
AL MacLean, HA Harrington, MPH Stumpf, HM Byrne
AL MacLean, HA Harrington, MPH Stumpf, et al.
Systems Medicine: Meth Molecular Biology: Springer, 2016 Springer Chapter